1001 Genomes
A Catalog of Arabidopsis thaliana Genetic Variation
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Recent News

NAR: Publication on AraPheno is now online

Ümit Seren, Dominik Grimm, Joffrey Fitz, Detlef Weigel, Magnus Nordborg, Karsten Borgwardt, Arthur Korte.
AraPheno: a public database for Arabidopsis thaliana phenotypes
Nucleic Acids Res (2017) 45 (D1): D1054-D1059.

Summary

Natural genetic variation makes it possible to discover evolutionary changes that have been maintained in a population because they are advantageous.

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Cell: 1001 Epigenomes published

Kawakatsu, TaijiAlonso-Blanco, Carlos et al.
Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
Cell , Volume 166 , Issue 2 , 492 – 505

Summary

The epigenome orchestrates genome accessibility, functionality, and three-dimensional structure. Because epigenetic variation can impact transcription and thus phenotypes, it may contribute to adaptation.

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Cell: 1135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

The 1001 Genomes Consortium (2016)
1135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana
Cell, Volume 166, Issue 2, 481-491

Summary

Arabidopsis thaliana serves as a model organism for the study of fundamental physiological, cellular, and molecular processes. It has also greatly advanced our understanding of intraspecific genome variation.

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New Web App: Extract and download VCF subsets

A new tool for extracting and downloading VCF subsets, VCFSubset, is now available.

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1001 Genomes Web Tools for sequence download and strain id now online

New 1001G Tools for sequence download and strain identification are now online.

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